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Dang Y, Liu Y, Hashem R, Bhattacharya D, Allen J, Stommel M, Cheng LK, Xu W

SoGut: A Soft Robotic Gastric Simulator.
Soft Robot. 2020;8(3):273-283 - PMID: 32559391 - DOI: 10.1089/soro.2019.0136

Hermanns S, Bhan A, Viney K

Ethics and benefits of systematic screening for active tuberculosis.
Int J Tuberc Lung Dis. 2020;24(5):44-47 - PMID: 32553043 - DOI: 10.5588/ijtld.17.0888

Kleinstiver BP, Sousa AA, Walton RT, Tak YE, Hsu JY, Clement K, Welch MM, Horng JE, Malagon-Lopez J, Scarfò I, Maus MV, Pinello L, Aryee MJ, Joung JK

Publisher Correction: Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing.
Nat Biotechnol. 2020;38(7):901 - PMID: 32541959 - DOI: 10.1038/s41587-020-0587-z

Cruz L, György B, Cheah PS, Kleinstiver BP, Eimer WA, Garcia SP, Sharma N, Ozelius LJ, Bragg DC, Joung JK, Norberto de Souza O, Macedo Timmers LFS, Breakefield XO

Mutant Allele-Specific CRISPR Disruption in DYT1 Dystonia Fibroblasts Restores Cell Function.
Mol Ther Nucleic Acids. 2020;21:1-12 - PMID: 32502938 - PMCID: PMC7270506 - DOI: 10.1016/j.omtn.2020.05.009

Grünewald J, Zhou R, Lareau CA, Garcia SP, Iyer S, Miller BR, Langner LM, Hsu JY, Aryee MJ, Joung JK

A dual-deaminase CRISPR base editor enables concurrent adenine and cytosine editing.
Nat Biotechnol. 2020;38(7):861-864 - PMID: 32483364 - PMCID: PMC7723518 - DOI: 10.1038/s41587-020-0535-y

Al-Samkari H, Leiva O, Dagogo-Jack I, Shaw A, Lennerz J, Iafrate AJ, Bendapudi PK, Connors JM

Impact of ALK Rearrangement on Venous and Arterial Thrombotic Risk in NSCLC.
J Thorac Oncol. 2020;15(9):1497-1506 - PMID: 32437899 - DOI: 10.1016/j.jtho.2020.04.033

Keskin T, Bakaric A, Waszyk P, Boulay G, Torsello M, Cornaz-Buros S, Chevalier N, Geiser T, Martin P, Volorio A, Iyer S, Kulkarni A, Letovanec I, Cherix S, Cote GM, Choy E, Digklia A, Montemurro M, Chebib I, Nielsen PG, Carcaboso AM, Mora J, Renella R, Suvà ML, Fusco C, Provero P, Rivera MN, Riggi N, Stamenkovic I

LIN28B Underlies the Pathogenesis of a Subclass of Ewing Sarcoma.
Cell Rep. 2020;31(2):107539 - PMID: 32294441 - DOI: 10.1016/j.celrep.2020.107539

Zeng J, Wu Y, Ren C, Bonanno J, Shen AH, Shea D, Gehrke JM, Clement K, Luk K, Yao Q, Kim R, Wolfe SA, Manis JP, Pinello L, Joung JK, Bauer DE

Therapeutic base editing of human hematopoietic stem cells.
Nat Med. 2020;26(4):535-541 - PMID: 32284612 - PMCID: PMC7869435 - DOI: 10.1038/s41591-020-0790-y

Abdelfettah S, Boulay G, Dubuissez M, Spruyt N, Garcia SP, Rengarajan S, Loison I, Leroy X, Rivera MN, Leprince D

hPCL3S promotes proliferation and migration of androgen-independent prostate cancer cells.
Oncotarget. 2020;11(12):1051-1074 - PMID: 32256978 - PMCID: PMC7105160 - DOI: 10.18632/oncotarget.27511

Fazio M, Ablain J, Chuan Y, Langenau DM, Zon LI

Zebrafish patient avatars in cancer biology and precision cancer therapy.
Nat Rev Cancer. 2020;20(5):263-273 - PMID: 32251397 - PMCID: PMC8011456 - DOI: 10.1038/s41568-020-0252-3

Keskin T, Bakaric A, Waszyk P, Boulay G, Torsello M, Cornaz-Buros S, Chevalier N, Geiser T, Martin P, Volorio A, Iyer S, Kulkarni A, Letovanec I, Cherix S, Cote GM, Choy E, Digklia A, Montemurro M, Chebib I, Nielsen PG, Carcaboso AM, Mora J, Renella R, Suvà ML, Fusco C, Provero P, Rivera MN, Riggi N, Stamenkovic I

LIN28B Underlies the Pathogenesis of a Subclass of Ewing Sarcoma LIN28B Control of EWS-FLI1 Stability.
Cell Rep. 2020;30(13):4567-4583.e5 - PMID: 32234488 - DOI: 10.1016/j.celrep.2019.12.053

Modinos G, Allen P, Zugman A, Dima D, Azis M, Samson C, Bonoldi I, Quinn B, Gifford GWG, Smart SE, Antoniades M, Bossong MG, Broome MR, Perez J, Howes OD, Stone JM, Grace AA, McGuire P

Neural Circuitry of Novelty Salience Processing in Psychosis Risk: Association With Clinical Outcome.
Schizophr Bull. 2020;46(3):670-679 - PMID: 32227226 - PMCID: PMC7147595 - DOI: 10.1093/schbul/sbz089

Zhang L, Awadalla M, Mahmood SS, Nohria A, Hassan MZO, Thuny F, Zlotoff DA, Murphy SP, Stone JR, Golden DLA, Alvi RM, Rokicki A, Jones-O'Connor M, Cohen JV, Heinzerling LM, Mulligan C, Armanious M, Barac A, Forrestal BJ, Sullivan RJ, Kwong RY, Yang EH, Damrongwatanasuk R, Chen CL, Gupta D, Kirchberger MC, Moslehi JJ, Coelho-Filho OR, Ganatra S, Rizvi MA, Sahni G, Tocchetti CG, Mercurio V, Mahmoudi M, Lawrence DP, Reynolds KL, Weinsaft JW, Baksi AJ, Ederhy S, Groarke JD, Lyon AR, Fradley MG, Thavendiranathan P, Neilan TG

Cardiovascular magnetic resonance in immune checkpoint inhibitor-associated myocarditis.
Eur Heart J. 2020;41(18):1733-1743 - PMID: 32112560 - PMCID: PMC7205467 - DOI: 10.1093/eurheartj/ehaa051

Dickstein DL, De Gasperi R, Gama Sosa MA, Perez-Garcia G, Short JA, Sosa H, Perez GM, Tschiffely AE, Dams-O'Connor K, Pullman MY, Knesaurek K, Knutsen A, Pham DL, Soleimani L, Jordan BD, Gordon WA, Delman BN, Shumyatsky G, Shahim PP, DeKosky ST, Stone JR, Peskind E, Blennow K, Zetterberg H, Chance SA, Torso M, Kostakoglu L, Sano M, Hof PR, Ahlers ST, Gandy S, Elder GA

Brain and blood biomarkers of tauopathy and neuronal injury in humans and rats with neurobehavioral syndromes following blast exposure.
Mol Psychiatry. 2020;26(10):5940-5954 - PMID: 32094584 - PMCID: PMC7484380 - DOI: 10.1038/s41380-020-0674-z

Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Raczkowski L, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A

Eleven grand challenges in single-cell data science.
Genome Biol. 2020;21(1):31 - PMID: 32033589 - PMCID: PMC7007675 - DOI: 10.1186/s13059-020-1926-6

Ozturk A, Mohammadi R, Pierce TT, Kamarthi S, Dhyani M, Grajo JR, Corey KE, Chung RT, Bhan AK, Chhatwal J, Samir AE

Diagnostic Accuracy of Shear Wave Elastography as a Non-invasive Biomarker of High-Risk Non-alcoholic Steatohepatitis in Patients with Non-alcoholic Fatty Liver Disease.
Ultrasound Med Biol. 2020;46(4):972-980 - PMID: 32005510 - PMCID: PMC7034057 - DOI: 10.1016/j.ultrasmedbio.2019.12.020

Sawhney V, Mc Lellan A, Chatha S, Perera D, Aderonke A, Juno S, Whittaker-Axon S, Daw H, Garcia J, Lambiase PD, Cullen S, Bhan A, Von Klemperer K, Walker F, Pandya B, Lowe MD, Ezzat V

Outcome of ACHD patients with non-inducible versus inducible IART undergoing cavo-tricuspid isthmus ablation: the role of empiric ablation.
J Interv Card Electrophysiol. 2020;60(1):49-56 - PMID: 31997041 - DOI: 10.1007/s10840-019-00692-y

Garibyan L, Moradi Tuchayi S, Wang Y, Khodorova A, Stemmer-Rachamimov A, Purschke M, Osseiran S, Evans CL, Mao J, Strichartz G, Anderson RR

Neural Selective Cryoneurolysis with Ice Slurry Injection in a Rat Model.
Anesthesiology. 2020;133(1):185-194 - PMID: 31977524 - PMCID: PMC7299828 - DOI: 10.1097/ALN.0000000000003124

Zheng W, Zhao W, Wu M, Song X, Caro F, Sun X, Gazzaniga F, Stefanetti G, Oh S, Mekalanos JJ, Kasper DL

Microbiota-targeted maternal antibodies protect neonates from enteric infection.
Nature. 2020;577(7791):543-548 - PMID: 31915378 - PMCID: PMC7362890 - DOI: 10.1038/s41586-019-1898-4

Ferrero G, Gomez E, Lyer S, Rovira M, Miserocchi M, Langenau DM, Bertrand JY, Wittamer V

The macrophage-expressed gene (mpeg) 1 identifies a subpopulation of B cells in the adult zebrafish.
J Leukoc Biol. 2020;107(3):431-443 - PMID: 31909502 - PMCID: PMC7064944 - DOI: 10.1002/JLB.1A1119-223R

Erturk-Hasdemir D, Oh SF, Okan NA, Stefanetti G, Gazzaniga FS, Seeberger PH, Plevy SE, Kasper DL

Symbionts exploit complex signaling to educate the immune system.
Proc Natl Acad Sci U S A. 2019;116(52):26157-26166 - PMID: 31811024 - PMCID: PMC6936714 - DOI: 10.1073/pnas.1915978116

Wallace ZS, Naden RP, Chari S, Choi H, Della-Torre E, Dicaire JF, Hart PA, Inoue D, Kawano M, Khosroshahi A, Kubota K, Lanzillotta M, Okazaki K, Perugino CA, Sharma A, Saeki T, Sekiguchi H, Schleinitz N, Stone JR, Takahashi N, Umehara H, Webster G, Zen Y, Stone JH, American College of Rheumatology/European League Against Rheumatism IgG4-Related Disease Classification Criteria Working Group

The 2019 American College of Rheumatology/European League Against Rheumatism Classification Criteria for IgG4-Related Disease.
Arthritis Rheumatol. 2019;72(1):7-19 - PMID: 31793250 - DOI: 10.1002/art.41120

Cancellieri S, Canver MC, Bombieri N, Giugno R, Pinello L

CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.
Bioinformatics. 2020;36(7):2001-2008 - PMID: 31764961 - PMCID: PMC7141852 - DOI: 10.1093/bioinformatics/btz867

Chen H, Lareau C, Andreani T, Vinyard ME, Garcia SP, Clement K, Andrade-Navarro MA, Buenrostro JD, Pinello L

Assessment of computational methods for the analysis of single-cell ATAC-seq data.
Genome Biol. 2019;20(1):241 - PMID: 31739806 - PMCID: PMC6859644 - DOI: 10.1186/s13059-019-1854-5

Hsu A, Bhattacharya KR, Chan HK, Huber TC, Gardner B, Stone JR, Angle JF

Effect of timing on endovascular therapy and exploratory laparotomy outcome in acute mesenteric ischemia.
Ann Gastroenterol. 2019;32(6):600-604 - PMID: 31700237 - PMCID: PMC6826075 - DOI: 10.20524/aog.2019.0419

Ma M, Ramirez AD, Wang T, Roberts RL, Harmon KE, Schoppik D, Sharma A, Kuang C, Goei SL, Gagnon JA, Zimmerman S, Tsai SQ, Reyon D, Joung JK, Aksay ERF, Schier AF, Pan YA

Zebrafish dscaml1 Deficiency Impairs Retinal Patterning and Oculomotor Function.
J Neurosci. 2019;40(1):143-158 - PMID: 31685652 - PMCID: PMC6939486 - DOI: 10.1523/JNEUROSCI.1783-19.2019

Menon M, Mohammadi S, Davila-Velderrain J, Goods BA, Cadwell TD, Xing Y, Stemmer-Rachamimov A, Shalek AK, Love JC, Kellis M, Hafler BP

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Nat Commun. 2019;10(1):4902 - PMID: 31653841 - PMCID: PMC6814749 - DOI: 10.1038/s41467-019-12780-8

Hillier K, Hughes A, Shamberger RC, Shusterman S, Perez-Atayde AR, Wassner AJ, Iafrate AJ, Dubuc A, Janeway KA, Rothenberg SM, Cox MC, Randolph GW, Wirth LJ, Tsai H, Church A, DuBois SG

A Novel ALK Fusion in Pediatric Medullary Thyroid Carcinoma.
Thyroid. 2019;29(11):1704-1707 - PMID: 31650892 - DOI: 10.1089/thy.2019.0041

Anastas JN, Zee BM, Kalin JH, Kim M, Guo R, Alexandrescu S, Blanco MA, Giera S, Gillespie SM, Das J, Wu M, Nocco S, Bonal DM, Nguyen QD, Suva ML, Bernstein BE, Alani R, Golub TR, Cole PA, Filbin MG, Shi Y

Re-programing Chromatin with a Bifunctional LSD1/HDAC Inhibitor Induces Therapeutic Differentiation in DIPG.
Cancer Cell. 2019;36(5):528-544.e10 - PMID: 31631026 - DOI: 10.1016/j.ccell.2019.09.005

Bigler ED, Abildskov TJ, Eggleston B, Taylor BA, Tate DF, Petrie JA, Newsome MR, Scheibel RS, Levin H, Walker WC, Goodrich-Hunsaker N, Tustison NJ, Stone JR, Mayer AR, Duncan TD, York GE, Wilde EA

Structural neuroimaging in mild traumatic brain injury: A chronic effects of neurotrauma consortium study.
Int J Methods Psychiatr Res. 2019;28(3):e1781 - PMID: 31608535 - PMCID: PMC6877164 - DOI: 10.1002/mpr.1781

Costa C, Wang Y, Ly A, Hosono Y, Murchie E, Walmsley CS, Huynh T, Healy C, Peterson R, Yanase S, Jakubik CT, Henderson LE, Damon LJ, Timonina D, Sanidas I, Pinto CJ, Mino-Kenudson M, Stone JR, Dyson NJ, Ellisen LW, Bardia A, Ebi H, Benes CH, Engelman JA, Juric D

PTEN Loss Mediates Clinical Cross-Resistance to CDK4/6 and PI3Kα Inhibitors in Breast Cancer.
Cancer Discov. 2019;10(1):72-85 - PMID: 31594766 - DOI: 10.1158/2159-8290.CD-18-0830

Nagaraja S, Quezada MA, Gillespie SM, Arzt M, Lennon JJ, Woo PJ, Hovestadt V, Kambhampati M, Filbin MG, Suva ML, Nazarian J, Monje M

Histone Variant and Cell Context Determine H3K27M Reprogramming of the Enhancer Landscape and Oncogenic State.
Mol Cell. 2019;76(6):965-980.e12 - PMID: 31588023 - PMCID: PMC7104854 - DOI: 10.1016/j.molcel.2019.08.030

Hanlon KS, Kleinstiver BP, Garcia SP, Zaborowski MP, Volak A, Spirig SE, Muller A, Sousa AA, Tsai SQ, Bengtsson NE, Lööv C, Ingelsson M, Chamberlain JS, Corey DP, Aryee MJ, Joung JK, Breakefield XO, Maguire CA, György B

High levels of AAV vector integration into CRISPR-induced DNA breaks.
Nat Commun. 2019;10(1):4439 - PMID: 31570731 - PMCID: PMC6769011 - DOI: 10.1038/s41467-019-12449-2

Guiney TE, Lopes MS, Kalra MK, Mooradian MJ, Neilan TG, Stone JR

Case 30-2019: A 65-Year-Old Woman with Lung Cancer and Chest Pain.
N Engl J Med. 2019;381(13):1268-1277 - PMID: 31553841 - DOI: 10.1056/NEJMcpc1900423

Kim GB, Rincon Fernandez Pacheco D, Saxon D, Yang A, Sabet S, Dutra-Clarke M, Levy R, Watkins A, Park H, Abbasi Akhtar A, Linesch PW, Kobritz N, Chandra SS, Grausam K, Ayala-Sarmiento A, Molina J, Sedivakova K, Hoang K, Tsyporin J, Gareau DS, Filbin MG, Bannykh S, Santiskulvong C, Wang Y, Tang J, Suva ML, Chen B, Danielpour M, Breunig JJ

Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements.
Cell. 2019;179(1):251-267.e24 - PMID: 31539496 - PMCID: PMC6934691 - DOI: 10.1016/j.cell.2019.08.013

Prabhakar S, Cheah PS, Zhang X, Zinter M, Gianatasio M, Hudry E, Bronson RT, Kwiatkowski DJ, Stemmer-Rachamimov A, Maguire CA, Sena-Esteves M, Tannous BA, Breakefield XO

Long-Term Therapeutic Efficacy of Intravenous AAV-Mediated Hamartin Replacement in Mouse Model of Tuberous Sclerosis Type 1.
Mol Ther Methods Clin Dev. 2019;15:18-26 - PMID: 31534984 - PMCID: PMC6745533 - DOI: 10.1016/j.omtm.2019.08.003

Champion SN, Stone JR

Immune checkpoint inhibitor associated myocarditis occurs in both high-grade and low-grade forms.
Mod Pathol. 2019;33(1):99-108 - PMID: 31534205 - DOI: 10.1038/s41379-019-0363-0

Newman JL, Stone JR

Immune checkpoint inhibition alters the inflammatory cell composition of human coronary artery atherosclerosis.
Cardiovasc Pathol. 2019;43:107148 - PMID: 31518915 - DOI: 10.1016/j.carpath.2019.107148

Black M, Liu CZ, Onozato M, Iafrate AJ, Darvishian F, Jour G, Cotzia P

Concurrent Identification of Novel EGFR-SEPT14 Fusion and ETV6-RET Fusion in Secretory Carcinoma of the Salivary Gland.
Head Neck Pathol. 2019;14(3):817-821 - PMID: 31502214 - PMCID: PMC7413937 - DOI: 10.1007/s12105-019-01074-6

Grünewald J, Zhou R, Iyer S, Lareau CA, Garcia SP, Aryee MJ, Joung JK

CRISPR DNA base editors with reduced RNA off-target and self-editing activities.
Nat Biotechnol. 2019;37(9):1041-1048 - PMID: 31477922 - PMCID: PMC6730565 - DOI: 10.1038/s41587-019-0236-6

Tilgner M, Vater TS, Habbel P, Cheng LL

High-Resolution Magic Angle Spinning (HRMAS) NMR Methods in Metabolomics.
Methods Mol Biol. 2019;2037:49-67 - PMID: 31463839 - DOI: 10.1007/978-1-4939-9690-2_4

Bathen TF, Cheng LL

Special issue on ex vivo NMR spectroscopy.
NMR Biomed. 2023;36(4):e4893 - PMID: 36624039 - DOI: 10.1002/nbm.4893

Lu DY, Ellegast JM, Ross KN, Malone CF, Lin S, Mabe NW, Dharia NV, Meyer A, Conway A, Su AH, Selich-Anderson J, Taslim C, Byrum AK, Seong BKA, Adane B, Gray NS, Rivera MN, Lessnick SL, Stegmaier K

The ETS transcription factor ETV6 constrains the transcriptional activity of EWS-FLI to promote Ewing sarcoma.
Nat Cell Biol. 2023;25(2):285-297 - PMID: 36658220 - PMCID: PMC9928584 - DOI: 10.1038/s41556-022-01059-8

Wu M, Zheng W, Song X, Bao B, Wang Y, Ramanan D, Yang D, Liu R, Macbeth JC, Do EA, Andrade WA, Yang T, Cho HS, Gazzaniga FS, Ilves M, Coronado D, Thompson C, Hang S, Chiu IM, Moffitt JR, Hsiao A, Mekalanos JJ, Benoist C, Kasper DL

Microbiome induced complement synthesized in the gut protects against enteric infections.
bioRxiv. 2023;:ePub - PMID: 36778396 - PMCID: PMC9915568 - DOI: 10.1101/2023.02.02.523770

Yin Z, Wu L, Zhang Y, Sun Y, Chen JW, Subudhi S, Ho W, Lee GY, Wang A, Gao X, Ren J, Zhu C, Zhang N, Ferraro GB, Muzikansky A, Zhang L, Stemmer-Rachamimov A, Mao J, Plotkin SR, Xu L

Co-Targeting IL-6 and EGFR signaling for the treatment of schwannomatosis and associated pain.
bioRxiv. 2023;:ePub - PMID: 36798353 - PMCID: PMC9934519 - DOI: 10.1101/2023.02.06.527377

Katz G, Hedgire SH, Stone JR, Perez-Espina S, Fernandes A, Perugino CA, Wallace ZS, Stone JH

IgG4-related disease as a variable-vessel vasculitis: A case series of 13 patients with medium-sized coronary artery involvement.
Semin Arthritis Rheum. 2023;60:152184 - PMID: 36848823 - PMCID: PMC10148901 - DOI: 10.1016/j.semarthrit.2023.152184

Kleiner DE, Lisker-Melman M, Wahed AS, Bhan AK, Nalesnik MA, Choi EK, Leonard KK, Ghany MG, Chung RT, Di Bisceglie AM

Immunostaining for Hepatitis B Viral Antigens in Liver: Association with Clinical, Biochemical and Virologic Features of Disease.
J Gastroenterol Hepatol. 2023;38(6):989-998 - PMID: 36890337 - PMCID: PMC10744323 - DOI: 10.1111/jgh.16167

Pavao A, Girinathan B, Peltier J, Altamirano Silva P, Dupuy B, Muti IH, Malloy C, Cheng LL, Bry L

Elucidating dynamic anaerobe metabolism with HRMAS 13C NMR and genome-scale modeling.
Nat Chem Biol. 2023;19(5):556-564 - PMID: 36894723 - PMCID: PMC10154198 - DOI: 10.1038/s41589-023-01275-9

Weichert-Leahey N, Shi H, Tao T, Oldridge DA, Durbin AD, Abraham BJ, Zimmerman MW, Zhu S, Wood AC, Reyon D, Joung JK, Young RA, Diskin SJ, Maris JM, Look AT

Genetic Predisposition to Neuroblastoma Results from a Regulatory Polymorphism that Promotes the Adrenergic Cell State.
bioRxiv. 2023;:ePub - PMID: 36909587 - PMCID: PMC10002714 - DOI: 10.1101/2023.02.28.530457

Vandergrift LA, Wang N, Zhu M, Li B, Chen S, Habbel P, Nowak J, Mason R, Grant A, Wang Y, Malloy C, Cheng LL

13 C NMR Quantification of Polyamine Syntheses in Rat Prostate.
NMR Biomed. 2023;36(8):e4931 - PMID: 36939957 - DOI: 10.1002/nbm.4931
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