Reset

Casimero FVC, Patalas ED, Stone JR

Sudden unexpected death in a middle-aged woman.
J Clin Pathol. 2024;77(5):297-300 - PMID: 38316542 - DOI: 10.1136/jcp-2022-208691

Lederer AR, Leonardi M, Talamanca L, Herrera A, Droin C, Khven I, Carvalho HJF, Valente A, Mantes AD, Arabí PM, Pinello L, Naef F, Manno G

Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations.
bioRxiv. 2024;:ePub - PMID: 38328127 - PMCID: PMC10849531 - DOI: 10.1101/2024.01.18.576093

Lin LY, Azad AD, Chiou CA, Kozanno L, Stemmer-Rachamimov A, Stone J, Lee NG

Antisynthetase Syndrome Causing Necrotizing Myositis Involving Extraocular Muscles.
Ophthalmic Plast Reconstr Surg. 2024;40(4):e111-e114 - PMID: 38346432 - DOI: 10.1097/IOP.0000000000002628

DaSilva LF, Senan S, Patel ZM, Reddy AJ, Gabbita S, Nussbaum Z, Córdova CMV, Wenteler A, Weber N, Tunjic TM, Khan TA, Li Z, Smith C, Bejan M, Louis LK, Cornejo P, Connell W, Wong ES, Meuleman W, Pinello L

DNA-Diffusion: Leveraging Generative Models for Controlling Chromatin Accessibility and Gene Expression via Synthetic Regulatory Elements.
bioRxiv. 2024;:ePub - PMID: 38352499 - PMCID: PMC10862870 - DOI: 10.1101/2024.02.01.578352

Stone JR, Nair V, Fishbein GA, Society for Cardiovascular Pathology Temporal Artery Biopsy Consensus Committee

The Minimal Criteria for Active Arteritis in a Temporal Artery Biopsy.
Cardiovasc Pathol. 2024;70:107622 - PMID: 38365063 - DOI: 10.1016/j.carpath.2024.107622

Prajapati K, Yan C, Yang Q, Arbitman S, Fitzgerald DP, Sharee S, Shaik J, Bosiacki J, Myers K, Paucarmayta A, Johnson DM, O'Neill T, Kundu S, Cusumano Z, Langermann S, Langenau DM, Patel S, Flies DB

The FLRT3-UNC5B checkpoint pathway inhibits T cell-based cancer immunotherapies.
Sci Adv. 2024;10(9):eadj4698 - PMID: 38427724 - PMCID: PMC10906930 - DOI: 10.1126/sciadv.adj4698

Grune J, Bajpai G, Ocak PT, Kaufmann E, Mentkowksi K, Pabel S, Kumowski N, Pulous FE, Tran KA, Rohde D, Zhang S, Iwamoto Y, Wojtkiewicz GR, Vinegoni C, Green U, Swirski FK, Stone JR, Lennerz JK, Divangahi M, Hulsmans M, Nahrendorf M

Virus-Induced Acute Respiratory Distress Syndrome Causes Cardiomyopathy Through Eliciting Inflammatory Responses in the Heart.
Circulation. 2024;150(1):49-61 - PMID: 38506045 - PMCID: PMC11216864 - DOI: 10.1161/CIRCULATIONAHA.123.066433

Xhori O, Deol N, Rivera CM, Zavras J, Weil SG, Zafari H, Thierauf JC, Faquin WC, Choy E, Rivera MN, John Iafrate A, Jaquinet A, Troulis MJ

A Comparison of Clear Cell Sarcoma to Jaw and Salivary Tumors Bearing EWS Fusions.
Head Neck Pathol. 2024;18(1):25 - PMID: 38526767 - PMCID: PMC10963349 - DOI: 10.1007/s12105-024-01625-6

Zhang AM, Elmoursi A, DiGiacomo DV, Zhou B, Tandon M, Hong JS, Yang NJ, Ong MS, Dighe AS, Berrios C, Poznansky MC, Iafrate AJ, Naranbhai V, Balazs A, Pillai S, Farmer JR, Barmettler S

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccine response in adults with predominantly antibody deficiency.
J Allergy Clin Immunol Glob. 2024;3(2):100234 - PMID: 38544577 - PMCID: PMC10965812 - DOI: 10.1016/j.jacig.2024.100234

van der Geest KSM, Sandovici M, Bley TA, Stone JR, Slart RHJA, Brouwer E

Large vessel giant cell arteritis.
Lancet Rheumatol. 2024;6(6):e397-e408 - PMID: 38574745 - DOI: 10.1016/S2665-9913(23)00300-4

Hoteit A, Casimero FVC, Stone JR, Cameron D, Isselbacher EM, Seyedsadjadi R, Gaggin HK

Wild-type Transthyretin Amyloid Deposition in an Ascending Aortic Aneurysm.
JACC Case Rep. 2024;29(9):102311 - PMID: 38576771 - PMCID: PMC10990737 - DOI: 10.1016/j.jaccas.2024.102311

Mittal K, Cooper GW, Lee BP, Su Y, Skinner KT, Shim J, Jonus HC, Kim WJ, Doshi M, Almanza D, Kynnap BD, Christie AL, Yang X, Cowley GS, Leeper BA, Morton CL, Dwivedi B, Lawrence T, Rupji M, Keskula P, Meyer S, Clinton CM, Bhasin M, Crompton BD, Tseng YY, Boehm JS, Ligon KL, Root DE, Murphy AJ, Weinstock DM, Gokhale PC, Spangle JM, Rivera MN, Mullen EA, Stegmaier K, Goldsmith KC, Hahn WC, Hong AL

Targeting TRIP13 in favorable histology Wilms tumor with nuclear export inhibitors synergizes with doxorubicin.
Commun Biol. 2024;7(1):426 - PMID: 38589567 - PMCID: PMC11001930 - DOI: 10.1038/s42003-024-06140-6

Wu S, Lin SX, Lu M, Subtelny AO, Wang Z, Dahl DM, Olumi AF, Wu CL

Assessment of 5-year overall survival in bladder cancer patients with incidental prostate cancer identified at radical cystoprostatectomy.
Int Urol Nephrol. 2019;51(9):1527-1535 - PMID: 31183659 - DOI: 10.1007/s11255-019-02181-7

Vivero M, Wang CI, Jo VY, Hollowell M, Cibas ES, Lindeman NI, Lowe AC

Molecular testing of different cytologic preparations in patients with advanced lung adenocarcinoma: which yields the best results?
J Am Soc Cytopathol. 2016;6(1):16-23 - PMID: 31042629 - DOI: 10.1016/j.jasc.2016.06.002

Kim WJ, Okimoto RA, Purton LE, Goodwin M, Haserlat SM, Dayyani F, Sweetser DA, McClatchey AI, Bernard OA, Look AT, Bell DW, Scadden DT, Haber DA

Mutations in the neutral sphingomyelinase gene SMPD3 implicate the ceramide pathway in human leukemias.
Blood. 2008;111(9):4716-22 - PMID: 18299447 - PMCID: PMC2343601 - DOI: 10.1182/blood-2007-10-113068

Kim WJ, Wittner BS, Amzallag A, Brannigan BW, Ting DT, Ramaswamy S, Maheswaran S, Haber DA

The WTX Tumor Suppressor Interacts with the Transcriptional Corepressor TRIM28.
J Biol Chem. 2015;290(23):14381-90 - PMID: 25882849 - PMCID: PMC4505506 - DOI: 10.1074/jbc.M114.631945

Powell AE, Wang Y, Li Y, Poulin EJ, Means AL, Washington MK, Higginbotham JN, Juchheim A, Prasad N, Levy SE, Guo Y, Shyr Y, Aronow BJ, Haigis KM, Franklin JL, Coffey RJ

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor.
Cell. 2012;149(1):146-58 - PMID: 22464327 - PMCID: PMC3563328 - DOI: 10.1016/j.cell.2012.02.042

Poulin EJ, Bera AK, Lu J, Lin YJ, Strasser SD, Paulo JA, Huang TQ, Morales C, Yan W, Cook J, Nowak JA, Brubaker DK, Joughin BA, Johnson CW, DeStefanis RA, Ghazi PC, Gondi S, Wales TE, Iacob RE, Bogdanova L, Gierut JJ, Li Y, Engen JR, Perez-Mancera PA, Braun BS, Gygi SP, Lauffenburger DA, Westover KD, Haigis KM

Tissue-Specific Oncogenic Activity of KRASA146T.
Cancer Discov. 2019;9(6):738-755 - PMID: 30952657 - PMCID: PMC6548671 - DOI: 10.1158/2159-8290.CD-18-1220

Polo JM, Anderssen E, Walsh RM, Schwarz BA, Nefzger CM, Lim SM, Borkent M, Apostolou E, Alaei S, Cloutier J, Bar-Nur O, Cheloufi S, Stadtfeld M, Figueroa ME, Robinton D, Natesan S, Melnick A, Zhu J, Ramaswamy S, Hochedlinger K

A molecular roadmap of reprogramming somatic cells into iPS cells.
Cell. 2012;151(7):1617-32 - PMID: 23260147 - PMCID: PMC3608203 - DOI: 10.1016/j.cell.2012.11.039

Bar-Nur O, Verheul C, Sommer AG, Brumbaugh J, Schwarz BA, Lipchina I, Huebner AJ, Mostoslavsky G, Hochedlinger K

Lineage conversion induced by pluripotency factors involves transient passage through an iPSC stage.
Nat Biotechnol. 2015;33(7):761-8 - PMID: 26098450 - PMCID: PMC4840929 - DOI: 10.1038/nbt.3247

Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, Hochedlinger K

Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling.
Cell. 2017;172(1-2):106-120.e21 - PMID: 29249356 - PMCID: PMC5766360 - DOI: 10.1016/j.cell.2017.11.023

Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, Hochedlinger K

Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling.
Cell. 2018;172(3):629-631 - PMID: 29373832 - PMCID: PMC5831378 - DOI: 10.1016/j.cell.2017.12.035

Schwarz BA, Cetinbas M, Clement K, Walsh RM, Cheloufi S, Gu H, Langkabel J, Kamiya A, Schorle H, Meissner A, Sadreyev RI, Hochedlinger K

Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming.
Cell Stem Cell. 2018;23(2):289-305.e5 - PMID: 30017590 - PMCID: PMC6086589 - DOI: 10.1016/j.stem.2018.06.013

Sontheimer-Phelps A, Chou DB, Tovaglieri A, Ferrante TC, Duckworth T, Fadel C, Frismantas V, Sutherland AD, Jalili-Firoozinezhad S, Kasendra M, Stas E, Weaver JC, Richmond CA, Levy O, Prantil-Baun R, Breault DT, Ingber DE

Human Colon-on-a-Chip Enables Continuous In Vitro Analysis of Colon Mucus Layer Accumulation and Physiology.
Cell Mol Gastroenterol Hepatol. 2019;9(3):507-526 - PMID: 31778828 - PMCID: PMC7036549 - DOI: 10.1016/j.jcmgh.2019.11.008

Novak R, Ingram M, Marquez S, Das D, Delahanty A, Herland A, Maoz BM, Jeanty SSF, Somayaji MR, Burt M, Calamari E, Chalkiadaki A, Cho A, Choe Y, Chou DB, Cronce M, Dauth S, Divic T, Fernandez-Alcon J, Ferrante T, Ferrier J, FitzGerald EA, Fleming R, Jalili-Firoozinezhad S, Grevesse T, Goss JA, Hamkins-Indik T, Henry O, Hinojosa C, Huffstater T, Jang KJ, Kujala V, Leng L, Mannix R, Milton Y, Nawroth J, Nestor BA, Ng CF, O'Connor B, Park TE, Sanchez H, Sliz J, Sontheimer-Phelps A, Swenor B, Thompson G, Touloumes GJ, Tranchemontagne Z, Wen N, Yadid M, Bahinski A, Hamilton GA, Levner D, Levy O, Przekwas A, Prantil-Baun R, Parker KK, Ingber DE

Robotic fluidic coupling and interrogation of multiple vascularized organ chips.
Nat Biomed Eng. 2020;4(4):407-420 - PMID: 31988458 - PMCID: PMC8057865 - DOI: 10.1038/s41551-019-0497-x

Chou DB, Frismantas V, Milton Y, David R, Pop-Damkov P, Ferguson D, MacDonald A, Vargel Bölükbaşı Ö, Joyce CE, Moreira Teixeira LS, Rech A, Jiang A, Calamari E, Jalili-Firoozinezhad S, Furlong BA, O'Sullivan LR, Ng CF, Choe Y, Marquez S, Myers KC, Weinberg OK, Hasserjian RP, Novak R, Levy O, Prantil-Baun R, Novina CD, Shimamura A, Ewart L, Ingber DE

Author Correction: On-chip recapitulation of clinical bone marrow toxicities and patient-specific pathophysiology.
Nat Biomed Eng. 2020;4(4):477 - PMID: 32051581 - DOI: 10.1038/s41551-020-0529-6

Sander JD, Yeh JR, Peterson RT, Joung JK

Engineering zinc finger nucleases for targeted mutagenesis of zebrafish.
Methods Cell Biol. 2011;104:51-8 - PMID: 21924156 - DOI: 10.1016/B978-0-12-374814-0.00003-3

Masia R, Peyton S, Lauwers GY, Brown I

Gastrointestinal biopsy findings of autoimmune enteropathy: a review of 25 cases.
Am J Surg Pathol. 2014;38(10):1319-29 - PMID: 25188868 - PMCID: PMC4162848 - DOI: 10.1097/PAS.0000000000000317

Hunt DP, Sahani DV, Corey KE, Masia R

Case records of the Massachusetts General Hospital. Case 30-2014. A 29-year-old man with diarrhea, nausea, and weight loss.
N Engl J Med. 2014;371(13):1238-47 - PMID: 25251619 - DOI: 10.1056/NEJMcpc1405218

Zhao R, Fallon TR, Saladi SV, Pardo-Saganta A, Villoria J, Mou H, Vinarsky V, Gonzalez-Celeiro M, Nunna N, Hariri LP, Camargo F, Ellisen LW, Rajagopal J

Yap tunes airway epithelial size and architecture by regulating the identity, maintenance, and self-renewal of stem cells.
Dev Cell. 2014;30(2):151-65 - PMID: 25043474 - PMCID: PMC4130488 - DOI: 10.1016/j.devcel.2014.06.004

Sharifnia T, Rusu V, Piccioni F, Bagul M, Imielinski M, Cherniack AD, Pedamallu CS, Wong B, Wilson FH, Garraway LA, Altshuler D, Golub TR, Root DE, Subramanian A, Meyerson M

Genetic modifiers of EGFR dependence in non-small cell lung cancer.
Proc Natl Acad Sci U S A. 2014;111(52):18661-6 - PMID: 25512530 - PMCID: PMC4284598 - DOI: 10.1073/pnas.1412228112

Zhang X, Choi PS, Francis JM, Imielinski M, Watanabe H, Cherniack AD, Meyerson M

Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers.
Nat Genet. 2015;48(2):176-82 - PMID: 26656844 - PMCID: PMC4857881 - DOI: 10.1038/ng.3470

Campbell JD, Alexandrov A, Kim J, Wala J, Berger AH, Pedamallu CS, Shukla SA, Guo G, Brooks AN, Murray BA, Imielinski M, Hu X, Ling S, Akbani R, Rosenberg M, Cibulskis C, Ramachandran A, Collisson EA, Kwiatkowski DJ, Lawrence MS, Weinstein JN, Verhaak RG, Wu CJ, Hammerman PS, Cherniack AD, Getz G, Cancer Genome Atlas Research Network, Artyomov MN, Schreiber R, Govindan R, Meyerson M

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas.
Nat Genet. 2016;48(6):607-16 - PMID: 27158780 - PMCID: PMC4884143 - DOI: 10.1038/ng.3564

Berger AH, Brooks AN, Wu X, Shrestha Y, Chouinard C, Piccioni F, Bagul M, Kamburov A, Imielinski M, Hogstrom L, Zhu C, Yang X, Pantel S, Sakai R, Watson J, Kaplan N, Campbell JD, Singh S, Root DE, Narayan R, Natoli T, Lahr DL, Tirosh I, Tamayo P, Getz G, Wong B, Doench J, Subramanian A, Golub TR, Meyerson M, Boehm JS

High-throughput Phenotyping of Lung Cancer Somatic Mutations.
Cancer Cell. 2016;30(2):214-228 - PMID: 27478040 - PMCID: PMC5003022 - DOI: 10.1016/j.ccell.2016.06.022

Imielinski M, Guo G, Meyerson M

Insertions and Deletions Target Lineage-Defining Genes in Human Cancers.
Cell. 2017;168(3):460-472.e14 - PMID: 28089356 - PMCID: PMC5564321 - DOI: 10.1016/j.cell.2016.12.025

Smolen GA, Zhang J, Zubrowski MJ, Edelman EJ, Luo B, Yu M, Ng LW, Scherber CM, Schott BJ, Ramaswamy S, Irimia D, Root DE, Haber DA

A genome-wide RNAi screen identifies multiple RSK-dependent regulators of cell migration.
Genes Dev. 2010;24(23):2654-65 - PMID: 21062900 - PMCID: PMC2994039 - DOI: 10.1101/gad.1989110

Takahashi F, Chiba N, Tajima K, Hayashida T, Shimada T, Takahashi M, Moriyama H, Brachtel E, Edelman EJ, Ramaswamy S, Maheswaran S

Breast tumor progression induced by loss of BTG2 expression is inhibited by targeted therapy with the ErbB/HER inhibitor lapatinib.
Oncogene. 2011;30(27):3084-95 - PMID: 21339742 - DOI: 10.1038/onc.2011.24

Honselmann KC, Pergolini I, Castillo CF, Deshpande V, Ting D, Taylor MS, Bolm L, Qadan M, Wellner U, Sandini M, Bausch D, Warshaw AL, Lillemoe KD, Keck T, Ferrone CR

Timing But Not Patterns of Recurrence Is Different Between Node-negative and Node-positive Resected Pancreatic Cancer.
Ann Surg. 2020;272(2):357-365 - PMID: 32675550 - PMCID: PMC6639153 - DOI: 10.1097/SLA.0000000000003123

Chougule A, Taylor MS, Nardi V, Chebib I, Cote GM, Choy E, Nielsen GP, Deshpande V

Spindle and Round Cell Sarcoma With EWSR1-PATZ1 Gene Fusion: A Sarcoma With Polyphenotypic Differentiation.
Am J Surg Pathol. 2019;43(2):220-228 - PMID: 30379650 - PMCID: PMC6590674 - DOI: 10.1097/PAS.0000000000001183

Taylor MS, Chougule A, MacLeay AR, Kurzawa P, Chebib I, Le L, Deshpande V

Morphologic Overlap Between Inflammatory Myofibroblastic Tumor and IgG4-related Disease: Lessons From Next-generation Sequencing.
Am J Surg Pathol. 2019;43(3):314-324 - PMID: 30451733 - PMCID: PMC6637760 - DOI: 10.1097/PAS.0000000000001167

Cai L, Michelakos T, Deshpande V, Arora KS, Yamada T, Ting DT, Taylor MS, Castillo CF, Warshaw AL, Lillemoe KD, Ferrone S, Ferrone CR

Role of Tumor-Associated Macrophages in the Clinical Course of Pancreatic Neuroendocrine Tumors (PanNETs).
Clin Cancer Res. 2019;25(8):2644-2655 - PMID: 30670493 - PMCID: PMC6582654 - DOI: 10.1158/1078-0432.CCR-18-1401

Leijssen LGJ, Dinaux AM, Amri R, Taylor MS, Deshpande V, Bordeianou LG, Kunitake H, Berger DL

Impact of intramural and extramural vascular invasion on stage II-III colon cancer outcomes.
J Surg Oncol. 2019;119(6):749-757 - PMID: 30644557 - PMCID: PMC6629581 - DOI: 10.1002/jso.25367

Chivukula RR, Montoro DT, Leung HM, Yang J, Shamseldin HE, Taylor MS, Dougherty GW, Zariwala MA, Carson J, Daniels MLA, Sears PR, Black KE, Hariri LP, Almogarri I, Frenkel EM, Vinarsky V, Omran H, Knowles MR, Tearney GJ, Alkuraya FS, Sabatini DM

A human ciliopathy reveals essential functions for NEK10 in airway mucociliary clearance.
Nat Med. 2020;26(2):244-251 - PMID: 31959991 - PMCID: PMC7018620 - DOI: 10.1038/s41591-019-0730-x

Langenau DM, Keefe MD, Storer NY, Guyon JR, Kutok JL, Le X, Goessling W, Neuberg DS, Kunkel LM, Zon LI

Corrigendium: Effects of RAS on the genesis of embryonal rhabdomyosarcoma.
Genes Dev. 2024;38(5-6):289 - PMID: 38631822 - PMCID: PMC11065167 - DOI: 10.1101/gad.351747.124

Tustison NJ, Yassa MA, Rizvi B, Cook PA, Holbrook AJ, Sathishkumar MT, Tustison MG, Gee JC, Stone JR, Avants BB

ANTsX neuroimaging-derived structural phenotypes of UK Biobank.
Sci Rep. 2024;14(1):8848 - PMID: 38632390 - PMCID: PMC11024129 - DOI: 10.1038/s41598-024-59440-6

Yilmaz OH, Deshpande V

Pathology and Genetics of Pancreatic Neoplasms.
Surg Pathol Clin. 2012;5(4):941-59 - PMID: 26838509 - DOI: 10.1016/j.path.2012.08.008

Conway KL, Kuballa P, Song JH, Patel KK, Castoreno AB, Yilmaz OH, Jijon HB, Zhang M, Aldrich LN, Villablanca EJ, Peloquin JM, Goel G, Lee IA, Mizoguchi E, Shi HN, Bhan AK, Shaw SY, Schreiber SL, Virgin HW, Shamji AF, Stappenbeck TS, Reinecker HC, Xavier RJ

Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection.
Gastroenterology. 2013;145(6):1347-57 - PMID: 23973919 - PMCID: PMC3840157 - DOI: 10.1053/j.gastro.2013.08.035

Chakraborty M, Hu S, Visness E, Del Giudice M, De Martino A, Bosia C, Sharp PA, Garg S

MicroRNAs organize intrinsic variation into stem cell states.
Proc Natl Acad Sci U S A. 2020;117(12):6942-6950 - PMID: 32139605 - PMCID: PMC7104302 - DOI: 10.1073/pnas.1920695117

Hernandez-Lain A, Hedley-Whyte ET, Hariri LP, Molyneaux B, Nagle KJ, Cole AJ, Kilbride R

Pathology of bilateral pulvinar degeneration following long duration status epilepticus.
Seizure. 2013;22(10):901-4 - PMID: 23962521 - DOI: 10.1016/j.seizure.2013.07.012

Conway KL, Kuballa P, Khor B, Zhang M, Shi HN, Virgin HW, Xavier RJ

ATG5 regulates plasma cell differentiation.
Autophagy. 2013;9(4):528-37 - PMID: 23327930 - PMCID: PMC3627668 - DOI: 10.4161/auto.23484
636 CSV HTML