Mounsey LA, Alape Moya D, Wright C, Langer N, Stone JR, Channick R, Wong AK, Rodriguez-Lopez J, Witkin AS

Association between thrombus histopathology and hemodynamic outcomes among patients with chronic thromboembolic pulmonary hypertension undergoing pulmonary endarterectomy.
Chest. 2024;167(4):1182-1190 - PMID: 39454997 - DOI: 10.1016/j.chest.2024.10.018

Collin M, Gagey G, Shanmugam V, Louissaint A, Okosun J, Sarkozy C, Nadel B

Follicular lymphoma research: an open dialogue for a collaborative roadmap.
Histopathology. 2024;86(1):79-93 - PMID: 39468961 - PMCID: PMC11648361 - DOI: 10.1111/his.15344

Engel N, Apolosi I, Bhargava A, Bhan A, Celan C, Mak A, Chikovore J, Chorna Y, Claassens MM, Dagron S, Denholm JT, Frick M, Furin J, Hoddinott G, Kashnitsky D, Kielmann K, Kunor T, Lin D, McDowell A, Mitchell EM, Oga-Omenka C, Samina P, Shikoli SA, Silva DS, Stein R, Stillo J, van der Westhuizen HM, Wingfield T, Zwerling A, Daftary A

Building social equity and person-centred innovation into the end TB response.
Int J Tuberc Lung Dis. 2024;28(11):517-520 - PMID: 39468025 - DOI: 10.5588/ijtld.24.0338

Lederer AR, Leonardi M, Talamanca L, Bobrovskiy DM, Herrera A, Droin C, Khven I, Carvalho HJF, Valente A, Dominguez Mantes A, Mulet Arabí P, Pinello L, Naef F, La Manno G

Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations.
Nat Methods. 2024;21(12):2271-2286 - PMID: 39482463 - PMCID: PMC11621032 - DOI: 10.1038/s41592-024-02471-8

Lucas CG, Gross AM, Romo CG, Dehner CA, Lazar AJ, Miettinen M, Pekmezci M, Quezado M, Rodriguez FJ, Stemmer-Rachamimov A, Viskochil D, Perry A, Symposium on Atypical Neurofibroma: State of the Science Members

Consensus recommendations for an integrated diagnostic approach to peripheral nerve sheath tumors arising in the setting of Neurofibromatosis type 1 (NF1).
Neuro Oncol. 2024;27(3):616-624 - PMID: 39500722 - PMCID: PMC11889724 - DOI: 10.1093/neuonc/noae235

Blum SM, Zlotoff DA, Smith NP, Kernin IJ, Ramesh S, Zubiri L, Caplin J, Samanta N, Martin S, Wang M, Tirard A, Song Y, Xu KH, Barth J, Sen P, Slowikowski K, Tantivit J, Manakongtreecheep K, Arnold BY, Nasrallah M, Pinto CJ, McLoughlin D, Jackson M, Chan P, Lawless A, Michaud WA, Sharova T, Nieman LT, Gainor JF, Wu CJ, Juric D, Mino-Kenudson M, Oliveira G, Sullivan RJ, Boland GM, Stone JR, Thomas MF, Neilan TG, Reynolds KL, Villani AC

Immune responses in checkpoint myocarditis across heart, blood and tumour.
Nature. 2024;636(8041):215-223 - PMID: 39506125 - DOI: 10.1038/s41586-024-08105-5

Dennis EL, Rowland JA, Esopenko C, Tustison NJ, Newsome MR, Hovenden ES, Avants BB, Gill J, Hinds SR, Kenney K, Lindsey HM, Martindale SL, Pugh MJ, Scheibel RS, Shahim PP, Shih R, Stone JR, Troyanskaya M, Walker WC, Werner K, York GE, Cifu DX, Tate DF, Wilde EA

Differences in Brain Volume in Military Service Members and Veterans After Blast-Related Mild TBI: A LIMBIC-CENC Study.
JAMA Netw Open. 2024;7(11):e2443416 - PMID: 39527059 - PMCID: PMC11555548 - DOI: 10.1001/jamanetworkopen.2024.43416

Meira M, Frey A, Chekkat N, Rybczynska M, Sellam Z, Park JS, Gazzaniga FS, Parmentier A, Le Gall M, Freeman GJ, Kasper DL, Sharpe AH, Rambeaux E, Shamshiev A

Targeting RGMb interactions: Discovery and preclinical characterization of potent anti-RGMb antibodies blocking multiple ligand bindings.
MAbs. 2024;16(1):2432403 - PMID: 39588913 - PMCID: PMC11601088 - DOI: 10.1080/19420862.2024.2432403

Zeng J, Nguyen MA, Liu P, da Silva LF, Levesque S, Lin LY, Justus DG, Petri K, Clement K, Porter SN, Verma A, Neri NR, Rosanwo T, Ciuculescu MF, Abriss D, Mintzer E, Maitland SA, Demirci S, Cha HJ, Orkin SH, Tisdale JF, Williams DA, Zhu LJ, Pruett-Miller SM, Pinello L, Joung JK, Pattanayak V, Manis JP, Armant M, Pellin D, Brendel C, Wolfe SA, Bauer DE

Gene editing without ex vivo culture evades genotoxicity in human hematopoietic stem cells.
Cell Stem Cell. 2024;32(2):191-208.e11 - PMID: 39672163 - PMCID: PMC11805672 - DOI: 10.1016/j.stem.2024.11.001

Mitsiades IR, Onozato M, Iafrate AJ, Hicks D, Gülhan DC, Sgroi DC, Rheinbay E

ERBB2/HOXB13 co-amplification with interstitial loss of BRCA1 defines a unique subset of breast cancers.
Breast Cancer Res. 2024;26(1):185 - PMID: 39695741 - PMCID: PMC11657829 - DOI: 10.1186/s13058-024-01943-1

Alborikan S, Althunayyan A, Pandya B, Von Klemperer K, Walker F, Cullen S, Bhan A, Badiani S, Encarnacion D, Monteiro R, Petersen SE, Bhattacharyya S, Lloyd G

Blood biomarkers to detect functional impairment in adult patients with repaired tetralogy of Fallot.
Int J Cardiol Congenit Heart Dis. 2023;14:100483 - PMID: 39712984 - PMCID: PMC11657782 - DOI: 10.1016/j.ijcchd.2023.100483

Lee JJY, Tao R, You Z, Haldipur P, Erickson AW, Farooq H, Hendriske LD, Abeysundara N, Richman CM, Wang EY, Das Gupta N, Hadley J, Batts M, Mount CW, Wu X, Rasnitsyn A, Bailey S, Cavalli FMG, Morrissy S, Garzia L, Michealraj KA, Visvanathan A, Fong V, Palotta J, Suarez R, Livingston BG, Liu M, Luu B, Daniels C, Loukides J, Bendel A, French PJ, Kros JM, Korshunov A, Kool M, Chico Ponce de León F, Perezpeña-Diazconti M, Lach B, Singh SK, Leary SES, Cho BK, Kim SK, Wang KC, Lee JY, Tominaga T, Weiss WA, Phillips JJ, Dai S, Zadeh G, Saad AG, Bognár L, Klekner A, Pollack IF, Hamilton RL, Ra YS, Grajkowska WA, Perek-Polnik M, Thompson RC, Kenney AM, Cooper MK, Mack SC, Jabado N, Lupien M, Gallo M, Ramaswamy V, Suva ML, Suzuki H, Millen KJ, Huang LF, Northcott PA, Taylor MD

ZIC1 is a context-dependent medulloblastoma driver in the rhombic lip.
Nat Genet. 2025;57(1):88-102 - PMID: 39753768 - PMCID: PMC11735403 - DOI: 10.1038/s41588-024-02014-z

Yu T, Li Z, Gibbs E, Iwase R, Francoeur MJ, Phan QV, Zhao J, Rosin J, Cole PA, Pinello L, Sherwood RI

Deaminase-mediated chromatin accessibility profiling with single-allele resolution.
bioRxiv. 2024;:ePub - PMID: 39763859 - PMCID: PMC11702760 - DOI: 10.1101/2024.12.17.628768

Di Stefano G, Fischer A, Chteinberg E, Bens S, Wagener R, Abramov D, Adam P, Bernhart SH, Borkhardt A, Burkhardt B, Del-Val C, Frühwald MC, Guazzo R, Hoell JI, Hummel M, Horn H, Klapper W, Krugmann J, Kurz KS, Lazzi S, Louissaint AJ, Mottok A, Oschlies I, Santi R, Schafernak K, Staiger AM, Zhang Y, Rosenwald A, Trümper L, Leoncini L, Ott G, Siebert R

MicroRNA Expression in High-Grade B-Cell Lymphoma With 11q Aberration.
Genes Chromosomes Cancer. 2025;64(1):e70021 - PMID: 39846133 - PMCID: PMC11755218 - DOI: 10.1002/gcc.70021

Shanmugam V, Tokcan N, Chafamo D, Sullivan S, Borji M, Martin H, Newton G, Nadaf N, Hanbury S, Barrera I, Cable D, Weir J, Ashenberg O, Pinkus G, Rodig S, Uhler C, Macosko E, Shipp M, Louissaint A, Chen F, Golub T

Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors.
bioRxiv. 2025;:ePub - PMID: 39896575 - PMCID: PMC11785141 - DOI: 10.1101/2025.01.24.631210

Kardani K, Ghouse SM, Din Abdul Jabbar MA, Rajasubramanian N, Sanchez Gil J, Stemmer-Rachamimov A, Soda Y, Martuza RL, Hara T, Wakimoto H, Rabkin SD

Immunocompetent murine glioblastoma stem-like cell models exhibiting distinct phenotypes.
Neurooncol Adv. 2024;7(1):vdae215 - PMID: 39896074 - PMCID: PMC11783566 - DOI: 10.1093/noajnl/vdae215

Gazzaniga FS, Kasper DL

The gut microbiome and cancer response to immune checkpoint inhibitors.
J Clin Invest. 2025;135(3):ePub - PMID: 39895632 - PMCID: PMC11785914 - DOI: 10.1172/JCI184321

Miller TE, El Farran CA, Couturier CP, Chen Z, D'Antonio JP, Verga J, Villanueva MA, Gonzalez Castro LN, Tong YE, Saadi TA, Chiocca AN, Zhang Y, Fischer DS, Heiland DH, Guerriero JL, Petrecca K, Suva ML, Shalek AK, Bernstein BE

Programs, origins and immunomodulatory functions of myeloid cells in glioma.
Nature. 2025;640(8060):1072-1082 - PMID: 40011771 - PMCID: PMC12018266 - DOI: 10.1038/s41586-025-08633-8

Zhao M, Ryall S, Brody SJ, Harris AC, Cabral K, Brownstein C, Kim JC, Smith AC, Dal Cin P, Narayan R, Sikkink K, Schmitt A, Hobbs GS, Fathi AT, Griffin GK, Sait SNJ, Iafrate AJ, Aster JC, Graubert TA, Nardi V, Dubuc AM

Integrative cytogenetic and molecular studies unmask "chromosomal mimicry" in hematologic malignancies.
Blood Adv. 2025;9(5):1003-1012 - PMID: 40014425 - PMCID: PMC11907439 - DOI: 10.1182/bloodadvances.2024013800

Wilde JH, Sun YY, Simpson SR, Hill ER, Fu Z, Bian EJ, Kinkaid MM, Villanueva P, Weybright AF, Terrell WR, Qureshi Z, Perera SS, Sheppard HS, Stone JR, Kundu BK, Kuan CY, Neumann KD

A positron emission tomography tracer for the imaging of oxidative stress in the central nervous system.
Nat Biomed Eng. 2025;9(5):716-729 - PMID: 40044816 - PMCID: PMC12092265 - DOI: 10.1038/s41551-025-01362-3

Gonzalez Castro LN, Gavish A, Bussema L, Mount CW, Neftel C, Nomura M, Chiocca EA, Bi WL, Arnaout O, Barker FG, Brown JM, Jordan JT, Batchelor TT, Stemmer-Rachamimov A, Plotkin SR, Tirosh I, Suvà ML

A single-cell atlas of Schwannoma across genetic backgrounds and anatomic locations.
Genome Med. 2025;17(1):37 - PMID: 40217315 - PMCID: PMC11992879 - DOI: 10.1186/s13073-025-01462-4

Li A, Gonda BL, Codd EM, von Paternos A, Mitchell DR, Herrmann MD, Kalyan P, Flynn SE, Dzu TQ, Gao C, Zhang E, Mendel JJ, Thierauf JC, Sadow PM, Denize T, Yang D, Fintelmann FJ, Fordham JA, Merkin RD, Bhan AK, Huang YC, Raizer J, Faquin WC, Faden DL, Gao X, Park JC, Wirth LJ, Kaluziak ST, Iafrate AJ

Reversible downregulation of HLA class I in adenoid cystic carcinoma.
J Immunother Cancer. 2025;13(4):ePub - PMID: 40254393 - PMCID: PMC12010351 - DOI: 10.1136/jitc-2024-011380

Bakr MN, Langenau DM

Hiding in plain sight: A new lymphoid organ discovered in zebrafish.
J Exp Med. 2025;222(6):ePub - PMID: 40249371 - PMCID: PMC12007470 - DOI: 10.1084/jem.20250321

Silverstein RA, Kim N, Kroell AS, Walton RT, Delano J, Butcher RM, Pacesa M, Smith BK, Christie KA, Ha LL, Meis RJ, Clark AB, Spinner AD, Lazzarotto CR, Li Y, Matsubara A, Urbina EO, Dahl GA, Correia BE, Marks DS, Tsai SQ, Pinello L, De Ravin SS, Liu Q, Kleinstiver BP

Custom CRISPR-Cas9 PAM variants via scalable engineering and machine learning.
Nature. 2025;643(8071):539-550 - PMID: 40262634 - PMCID: PMC12449813 - DOI: 10.1038/s41586-025-09021-y

Patel AV, Miloslavsky E, Reda H, Stone JR, Bolster MB

A 27-Year-Old Woman with Acute Encephalopathy and Painful, Bilateral Cervical Lymphadenopathy.
Arthritis Care Res (Hoboken). 2025;77(9):1069-1077 - PMID: 40289879 - DOI: 10.1002/acr.25563

Beck JA, Mazcko C, Belluco S, Bitar M, Brat D, Bush JW, Chkheidze R, Corps KN, Frank C, Giannini C, Horbinski C, Huse JT, Koehler JW, Miller AD, Miller CR, O'Sullivan MG, Phillips JJ, Rissi DR, Schott CR, Stemmer-Rachamimov A, Yip S, LeBlanc AK

Comparative pathology boards facilitate the translation of knowledge between canine and human cancer patients.
Brain Pathol. 2025;35(5):e70013 - PMID: 40325876 - PMCID: PMC12352920 - DOI: 10.1111/bpa.70013

Li Z, Rius Rigau A, Xie W, Huang L, Ye W, Li YN, Matei AE, Bergmann C, Shao X, Zou H, Wang J, Pinello L, Distler JHW, He R, Liang M

Spatial multiomics decipher fibroblast-macrophage dynamics in systemic sclerosis.
Ann Rheum Dis. 2025;84(7):1231-1245 - PMID: 40410053 - DOI: 10.1016/j.ard.2025.04.025

Chen MY, Rider AB, Ferry JA, Hasserjian RP, Nardi V, Louissaint A, Sohani AR, Yuen LD

Comparison of Immunohistochemistry With Fluorescence In Situ Hybridization for Assessment of CCND1 Rearrangement in Plasma Cell Myeloma.
Am J Surg Pathol. 2025;49(11):1143-1149 - PMID: 40407378 - DOI: 10.1097/PAS.0000000000002421

Abou Haidar E, Prabhakar S, Cheah PS, Hanlon KS, Espinoza P, Crain AV, Patel N, Radcliff GW, Cheng M, Hernández IC, Minderler S, de la Cruz D, Ng C, da Hora CC, Charest A, Stemmer-Rachamimov A, Jowett N, Breakefield XO, Maguire CA

Engineered AAV capsids mediate transduction of murine neurofibroma and sciatic nerve.
Gene Ther. 2025;32(4):385-397 - PMID: 40494929 - DOI: 10.1038/s41434-025-00542-9

Sreekanth V, Jan M, Zhao KT, Lim D, Siriwongsup S, Davis JR, McConkey M, Kovalcik V, Barkal S, Law BK, Fife J, Tian N, Vinyard ME, Becerra B, Kampmann M, Sherwood RI, Pinello L, Liu DR, Ebert BL, Choudhary A

A Molecular Glue Approach to Control the Half-Life of CRISPR-Based Technologies.
J Am Chem Soc. 2025;147(27):23844-23856 - PMID: 40586242 - PMCID: PMC12380249 - DOI: 10.1021/jacs.5c06230

Maleszewski JJ, Banner J, de Boer H, De Gaspari M, Fishbein MC, Parsons S, Sampson B, Sheppard MN, Van der Wal AC, Stone JR, Michaud K

Lymphocytic Myocarditis: A histopathologic definition and classification from the Society for Cardiovascular Pathology and Association for European Cardiovascular Pathology. II: Surgical and Autopsy Specimens.
Cardiovasc Pathol. 2025;78:107748 - PMID: 40582474 - DOI: 10.1016/j.carpath.2025.107748

Luecken MD, Gigante S, Burkhardt DB, Cannoodt R, Strobl DC, Markov NS, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard ME, Magruder DS, Mueller MF, Andersson A, Dann E, Qin Q, Otto DJ, Klein M, Botvinnik OB, Deconinck L, Waldrant K, Yasa SN, Szałata A, Benz A, Li Z, Open Problems Jamboree Members, Bloom JM, Pisco AO, Saez-Rodriguez J, Wulsin D, Pinello L, Saeys Y, Theis FJ, Krishnaswamy S

Defining and benchmarking open problems in single-cell analysis.
Nat Biotechnol. 2025;43(7):1035-1040 - PMID: 40595413 - DOI: 10.1038/s41587-025-02694-w

Hanley A, Das S, Nguyen T, Mastoris I, Michel E, Stone JR, Crowley J, Michaud G

Pulsed-field ablation in a patient with ventricular arrhythmia storm receiving mechanical circulatory support.
HeartRhythm Case Rep. 2025;11(5):425-428 - PMID: 40656005 - PMCID: PMC12242955 - DOI: 10.1016/j.hrcr.2025.02.006

Levesque S, Kawashima N, Hwang G, Becerra B, Schoonenberg VAC, Mannherz W, Homfeldt L, Pinello L, Agarwal S, Bauer DE

In cellulo DNA assembly for targeted genomic integration and rearrangement in human cells.
bioRxiv. 2025;:ePub - PMID: 40667027 - PMCID: PMC12262614 - DOI: 10.1101/2025.06.16.659926

Luthra I, Priyadarshi S, Guo R, Mahieu L, Kempynck N, Dooley D, Penzar D, Vorontsov I, Sheng Y, Tu X, Klie A, Drusinsky S, Floren A, Armand E, Alasoo K, Seelig G, Tewhey R, Koo P, Agarwal V, Gosai S, Pinello L, White MA, Lal A, Zeitlinger J, Pollard KS, Libbrecht M, Carter H, Mostafavi S, Kulakovskiy I, Hsiao W, Aerts S, Zhou J, de Boer CG

GAME: Genomic API for Model Evaluation.
bioRxiv. 2025;:ePub - PMID: 40672207 - PMCID: PMC12265512 - DOI: 10.1101/2025.07.04.663250

Nam L, Connolly M, Rowe K, Stone JR, Lanuti M, Bloom JP

Resection and Reconstruction of a Complex Mediastinal Paraganglioma Involving Major Cardiac Structures.
Ann Thorac Surg. 2025;120(6):1184-1187 - PMID: 40684898 - DOI: 10.1016/j.athoracsur.2025.06.048
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