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Wu S, Lin SX, Lu M, Subtelny AO, Wang Z, Dahl DM, Olumi AF, Wu CL

Assessment of 5-year overall survival in bladder cancer patients with incidental prostate cancer identified at radical cystoprostatectomy.
Int Urol Nephrol. 2019;51(9):1527-1535 - PMID: 31183659 - DOI: 10.1007/s11255-019-02181-7

Vivero M, Wang CI, Jo VY, Hollowell M, Cibas ES, Lindeman NI, Lowe AC

Molecular testing of different cytologic preparations in patients with advanced lung adenocarcinoma: which yields the best results?
J Am Soc Cytopathol. 2016;6(1):16-23 - PMID: 31042629 - DOI: 10.1016/j.jasc.2016.06.002

Kim WJ, Okimoto RA, Purton LE, Goodwin M, Haserlat SM, Dayyani F, Sweetser DA, McClatchey AI, Bernard OA, Look AT, Bell DW, Scadden DT, Haber DA

Mutations in the neutral sphingomyelinase gene SMPD3 implicate the ceramide pathway in human leukemias.
Blood. 2008;111(9):4716-22 - PMID: 18299447 - PMCID: PMC2343601 - DOI: 10.1182/blood-2007-10-113068

Kim WJ, Wittner BS, Amzallag A, Brannigan BW, Ting DT, Ramaswamy S, Maheswaran S, Haber DA

The WTX Tumor Suppressor Interacts with the Transcriptional Corepressor TRIM28.
J Biol Chem. 2015;290(23):14381-90 - PMID: 25882849 - PMCID: PMC4505506 - DOI: 10.1074/jbc.M114.631945

Powell AE, Wang Y, Li Y, Poulin EJ, Means AL, Washington MK, Higginbotham JN, Juchheim A, Prasad N, Levy SE, Guo Y, Shyr Y, Aronow BJ, Haigis KM, Franklin JL, Coffey RJ

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor.
Cell. 2012;149(1):146-58 - PMID: 22464327 - PMCID: PMC3563328 - DOI: 10.1016/j.cell.2012.02.042

Poulin EJ, Bera AK, Lu J, Lin YJ, Strasser SD, Paulo JA, Huang TQ, Morales C, Yan W, Cook J, Nowak JA, Brubaker DK, Joughin BA, Johnson CW, DeStefanis RA, Ghazi PC, Gondi S, Wales TE, Iacob RE, Bogdanova L, Gierut JJ, Li Y, Engen JR, Perez-Mancera PA, Braun BS, Gygi SP, Lauffenburger DA, Westover KD, Haigis KM

Tissue-Specific Oncogenic Activity of KRASA146T.
Cancer Discov. 2019;9(6):738-755 - PMID: 30952657 - PMCID: PMC6548671 - DOI: 10.1158/2159-8290.CD-18-1220

Polo JM, Anderssen E, Walsh RM, Schwarz BA, Nefzger CM, Lim SM, Borkent M, Apostolou E, Alaei S, Cloutier J, Bar-Nur O, Cheloufi S, Stadtfeld M, Figueroa ME, Robinton D, Natesan S, Melnick A, Zhu J, Ramaswamy S, Hochedlinger K

A molecular roadmap of reprogramming somatic cells into iPS cells.
Cell. 2012;151(7):1617-32 - PMID: 23260147 - PMCID: PMC3608203 - DOI: 10.1016/j.cell.2012.11.039

Bar-Nur O, Verheul C, Sommer AG, Brumbaugh J, Schwarz BA, Lipchina I, Huebner AJ, Mostoslavsky G, Hochedlinger K

Lineage conversion induced by pluripotency factors involves transient passage through an iPSC stage.
Nat Biotechnol. 2015;33(7):761-8 - PMID: 26098450 - PMCID: PMC4840929 - DOI: 10.1038/nbt.3247

Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, Hochedlinger K

Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling.
Cell. 2017;172(1-2):106-120.e21 - PMID: 29249356 - PMCID: PMC5766360 - DOI: 10.1016/j.cell.2017.11.023

Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, Hochedlinger K

Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling.
Cell. 2018;172(3):629-631 - PMID: 29373832 - PMCID: PMC5831378 - DOI: 10.1016/j.cell.2017.12.035

Schwarz BA, Cetinbas M, Clement K, Walsh RM, Cheloufi S, Gu H, Langkabel J, Kamiya A, Schorle H, Meissner A, Sadreyev RI, Hochedlinger K

Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming.
Cell Stem Cell. 2018;23(2):289-305.e5 - PMID: 30017590 - PMCID: PMC6086589 - DOI: 10.1016/j.stem.2018.06.013

Sontheimer-Phelps A, Chou DB, Tovaglieri A, Ferrante TC, Duckworth T, Fadel C, Frismantas V, Sutherland AD, Jalili-Firoozinezhad S, Kasendra M, Stas E, Weaver JC, Richmond CA, Levy O, Prantil-Baun R, Breault DT, Ingber DE

Human Colon-on-a-Chip Enables Continuous In Vitro Analysis of Colon Mucus Layer Accumulation and Physiology.
Cell Mol Gastroenterol Hepatol. 2019;9(3):507-526 - PMID: 31778828 - PMCID: PMC7036549 - DOI: 10.1016/j.jcmgh.2019.11.008

Novak R, Ingram M, Marquez S, Das D, Delahanty A, Herland A, Maoz BM, Jeanty SSF, Somayaji MR, Burt M, Calamari E, Chalkiadaki A, Cho A, Choe Y, Chou DB, Cronce M, Dauth S, Divic T, Fernandez-Alcon J, Ferrante T, Ferrier J, FitzGerald EA, Fleming R, Jalili-Firoozinezhad S, Grevesse T, Goss JA, Hamkins-Indik T, Henry O, Hinojosa C, Huffstater T, Jang KJ, Kujala V, Leng L, Mannix R, Milton Y, Nawroth J, Nestor BA, Ng CF, O'Connor B, Park TE, Sanchez H, Sliz J, Sontheimer-Phelps A, Swenor B, Thompson G, Touloumes GJ, Tranchemontagne Z, Wen N, Yadid M, Bahinski A, Hamilton GA, Levner D, Levy O, Przekwas A, Prantil-Baun R, Parker KK, Ingber DE

Robotic fluidic coupling and interrogation of multiple vascularized organ chips.
Nat Biomed Eng. 2020;4(4):407-420 - PMID: 31988458 - PMCID: PMC8057865 - DOI: 10.1038/s41551-019-0497-x

Chou DB, Frismantas V, Milton Y, David R, Pop-Damkov P, Ferguson D, MacDonald A, Vargel Bölükbaşı Ö, Joyce CE, Moreira Teixeira LS, Rech A, Jiang A, Calamari E, Jalili-Firoozinezhad S, Furlong BA, O'Sullivan LR, Ng CF, Choe Y, Marquez S, Myers KC, Weinberg OK, Hasserjian RP, Novak R, Levy O, Prantil-Baun R, Novina CD, Shimamura A, Ewart L, Ingber DE

Author Correction: On-chip recapitulation of clinical bone marrow toxicities and patient-specific pathophysiology.
Nat Biomed Eng. 2020;4(4):477 - PMID: 32051581 - DOI: 10.1038/s41551-020-0529-6

Sander JD, Yeh JR, Peterson RT, Joung JK

Engineering zinc finger nucleases for targeted mutagenesis of zebrafish.
Methods Cell Biol. 2011;104:51-8 - PMID: 21924156 - DOI: 10.1016/B978-0-12-374814-0.00003-3

Masia R, Peyton S, Lauwers GY, Brown I

Gastrointestinal biopsy findings of autoimmune enteropathy: a review of 25 cases.
Am J Surg Pathol. 2014;38(10):1319-29 - PMID: 25188868 - PMCID: PMC4162848 - DOI: 10.1097/PAS.0000000000000317

Hunt DP, Sahani DV, Corey KE, Masia R

Case records of the Massachusetts General Hospital. Case 30-2014. A 29-year-old man with diarrhea, nausea, and weight loss.
N Engl J Med. 2014;371(13):1238-47 - PMID: 25251619 - DOI: 10.1056/NEJMcpc1405218

Kedrin D, Masia R, Nazarian RM, Garber JJ

Mycobacterium chelonae bacteremia after first dose of infliximab for ulcerative colitis.
Am J Gastroenterol. 2014;109(9):1501-2 - PMID: 25196883 - PMCID: PMC4423733 - DOI: 10.1038/ajg.2014.209

Gupta NK, Masia R

Cord colitis syndrome: a cause of granulomatous inflammation in the upper and lower gastrointestinal tract.
Am J Surg Pathol. 2013;37(7):1109-13 - PMID: 23715165 - PMCID: PMC3687023 - DOI: 10.1097/PAS.0b013e31828a827a

Bender SL, Sherry NA, Masia R

Case records of the Massachusetts General Hospital. Case 16-2013. A 12-year-old girl with irritability, hypersomnia, and somatic symptoms.
N Engl J Med. 2013;368(21):2015-24 - PMID: 23697517 - PMCID: PMC4766583 - DOI: 10.1056/NEJMcpc1208145

Masia R, Pratt DS, Misdraji J

A histopathologic pattern of centrilobular hepatocyte injury suggests 6-mercaptopurine-induced hepatotoxicity in patients with inflammatory bowel disease.
Arch Pathol Lab Med. 2012;136(6):618-22 - PMID: 22646267 - DOI: 10.5858/arpa.2011-0214-OA

Masia R, Mino-Kenudson M, Warshaw AL, Pitman MB, Misdraji J

Pancreatic mucinous cystic neoplasm of the main pancreatic duct.
Arch Pathol Lab Med. 2011;135(2):264-7 - PMID: 21284448 - DOI: 10.5858/135.2.264

Khor B, Gagnon JD, Goel G, Roche MI, Conway KL, Tran K, Aldrich LN, Sundberg TB, Paterson AM, Mordecai S, Dombkowski D, Schirmer M, Tan PH, Bhan AK, Roychoudhuri R, Restifo NP, O'Shea JJ, Medoff BD, Shamji AF, Schreiber SL, Sharpe AH, Shaw SY, Xavier RJ

The kinase DYRK1A reciprocally regulates the differentiation of Th17 and regulatory T cells.
Elife. 2015;4:ePub - PMID: 25998054 - PMCID: PMC4441007 - DOI: 10.7554/eLife.05920

Sundberg TB, Choi HG, Song JH, Russell CN, Hussain MM, Graham DB, Khor B, Gagnon J, O'Connell DJ, Narayan K, Dančík V, Perez JR, Reinecker HC, Gray NS, Schreiber SL, Xavier RJ, Shamji AF

Small-molecule screening identifies inhibition of salt-inducible kinases as a therapeutic strategy to enhance immunoregulatory functions of dendritic cells.
Proc Natl Acad Sci U S A. 2014;111(34):12468-73 - PMID: 25114223 - PMCID: PMC4151730 - DOI: 10.1073/pnas.1412308111

Shaw SY, Tran K, Castoreno AB, Peloquin JM, Lassen KG, Khor B, Aldrich LN, Tan PH, Graham DB, Kuballa P, Goel G, Daly MJ, Shamji AF, Schreiber SL, Xavier RJ

Selective modulation of autophagy, innate immunity, and adaptive immunity by small molecules.
ACS Chem Biol. 2013;8(12):2724-2733 - PMID: 24168452 - PMCID: PMC3951132 - DOI: 10.1021/cb400352d

Conway KL, Kuballa P, Khor B, Zhang M, Shi HN, Virgin HW, Xavier RJ

ATG5 regulates plasma cell differentiation.
Autophagy. 2013;9(4):528-37 - PMID: 23327930 - PMCID: PMC3627668 - DOI: 10.4161/auto.23484

Khor B, Gardet A, Xavier RJ

Genetics and pathogenesis of inflammatory bowel disease.
Nature. 2011;474(7351):307-17 - PMID: 21677747 - PMCID: PMC3204665 - DOI: 10.1038/nature10209

Capelozzi VL, Allen TC, Beasley MB, Cagle PT, Guinee D, Hariri LP, Husain AN, Jain D, Lantuejoul S, Larsen BT, Miller R, Mino-Kenudson M, Mehrad M, Raparia K, Roden A, Schneider F, Sholl LM, Smith ML

Molecular and Immune Biomarkers in Acute Respiratory Distress Syndrome: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2017;141(12):1719-1727 - PMID: 28613912 - DOI: 10.5858/arpa.2017-0115-SA

Désogère P, Tapias LF, Hariri LP, Rotile NJ, Rietz TA, Probst CK, Blasi F, Day H, Mino-Kenudson M, Weinreb P, Violette SM, Fuchs BC, Tager AM, Lanuti M, Caravan P

Type I collagen-targeted PET probe for pulmonary fibrosis detection and staging in preclinical models.
Sci Transl Med. 2017;9(384):ePub - PMID: 28381537 - PMCID: PMC5568793 - DOI: 10.1126/scitranslmed.aaf4696

Roden AC, Aisner DL, Allen TC, Aubry MC, Barrios RJ, Beasley MB, Cagle PT, Capelozzi VL, Dacic S, Ge Y, Hariri LP, Lantuejoul S, Miller RA, Mino-Kenudson M, Moreira AL, Raparia K, Rekhtman N, Sholl L, Smith ML, Tsao MS, Vivero M, Yatabe Y, Yi ES

Diagnosis of Acute Cellular Rejection and Antibody-Mediated Rejection on Lung Transplant Biopsies: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2016;141(3):437-444 - PMID: 27819763 - DOI: 10.5858/arpa.2016-0459-SA

Raparia K, Aisner DL, Allen TC, Beasley MB, Borczuk A, Cagle PT, Capelozzi V, Dacic S, Hariri LP, Kerr KM, Lantuejoul S, Mino-Kenudson M, Rekhtman N, Roden AC, Roy-Chowdhuri S, Sholl L, Smith ML, Thunnissen E, Tsao MS, Yatabe Y

Transbronchial Lung Cryobiopsy for Interstitial Lung Disease Diagnosis: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2016;140(11):1281-1284 - PMID: 27441784 - DOI: 10.5858/arpa.2016-0258-SA

Sholl LM, Aisner DL, Allen TC, Beasley MB, Cagle PT, Capelozzi VL, Dacic S, Hariri LP, Kerr KM, Lantuejoul S, Mino-Kenudson M, Raparia K, Rekhtman N, Roy-Chowdhuri S, Thunnissen E, Tsao M, Vivero M, Yatabe Y

Liquid Biopsy in Lung Cancer: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2016;140(8):825-9 - PMID: 27195432 - DOI: 10.5858/arpa.2016-0163-SA

Roy-Chowdhuri S, Aisner DL, Allen TC, Beasley MB, Borczuk A, Cagle PT, Capelozzi V, Dacic S, da Cunha Santos G, Hariri LP, Kerr KM, Lantuejoul S, Mino-Kenudson M, Moreira A, Raparia K, Rekhtman N, Sholl L, Thunnissen E, Tsao MS, Vivero M, Yatabe Y

Biomarker Testing in Lung Carcinoma Cytology Specimens: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2016;140(11):1267-1272 - PMID: 27081878 - DOI: 10.5858/arpa.2016-0091-SA

Sholl LM, Aisner DL, Allen TC, Beasley MB, Borczuk AC, Cagle PT, Capelozzi V, Dacic S, Hariri L, Kerr KM, Lantuejoul S, Mino-Kenudson M, Raparia K, Rekhtman N, Roy-Chowdhuri S, Thunnissen E, Tsao MS, Yatabe Y, Members of Pulmonary Pathology Society

Programmed Death Ligand-1 Immunohistochemistry--A New Challenge for Pathologists: A Perspective From Members of the Pulmonary Pathology Society.
Arch Pathol Lab Med. 2016;140(4):341-4 - PMID: 26780537 - DOI: 10.5858/arpa.2015-0506-SA

Bennett JA, Sanada S, Selig MK, Hariri LP, Nielsen GP, Oliva E

Giant Cell Tumor of the Uterus: A Report of 3 Cases With a Spectrum of Morphologic Features.
Int J Gynecol Pathol. 2015;34(4):340-50 - PMID: 25851705 - DOI: 10.1097/PGP.0000000000000164

Hariri LP

In vivo microscopy: will the microscope move from our desk into the patient?
Arch Pathol Lab Med. 2015;139(6):719-20 - PMID: 26030239 - DOI: 10.5858/arpa.2014-0549-ED

Zhao R, Fallon TR, Saladi SV, Pardo-Saganta A, Villoria J, Mou H, Vinarsky V, Gonzalez-Celeiro M, Nunna N, Hariri LP, Camargo F, Ellisen LW, Rajagopal J

Yap tunes airway epithelial size and architecture by regulating the identity, maintenance, and self-renewal of stem cells.
Dev Cell. 2014;30(2):151-65 - PMID: 25043474 - PMCID: PMC4130488 - DOI: 10.1016/j.devcel.2014.06.004

Hernandez-Lain A, Hedley-Whyte ET, Hariri LP, Molyneaux B, Nagle KJ, Cole AJ, Kilbride R

Pathology of bilateral pulvinar degeneration following long duration status epilepticus.
Seizure. 2013;22(10):901-4 - PMID: 23962521 - DOI: 10.1016/j.seizure.2013.07.012

Chakraborty M, Hu S, Visness E, Del Giudice M, De Martino A, Bosia C, Sharp PA, Garg S

MicroRNAs organize intrinsic variation into stem cell states.
Proc Natl Acad Sci U S A. 2020;117(12):6942-6950 - PMID: 32139605 - PMCID: PMC7104302 - DOI: 10.1073/pnas.1920695117

Conway KL, Kuballa P, Song JH, Patel KK, Castoreno AB, Yilmaz OH, Jijon HB, Zhang M, Aldrich LN, Villablanca EJ, Peloquin JM, Goel G, Lee IA, Mizoguchi E, Shi HN, Bhan AK, Shaw SY, Schreiber SL, Virgin HW, Shamji AF, Stappenbeck TS, Reinecker HC, Xavier RJ

Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection.
Gastroenterology. 2013;145(6):1347-57 - PMID: 23973919 - PMCID: PMC3840157 - DOI: 10.1053/j.gastro.2013.08.035

Yilmaz OH, Deshpande V

Pathology and Genetics of Pancreatic Neoplasms.
Surg Pathol Clin. 2012;5(4):941-59 - PMID: 26838509 - DOI: 10.1016/j.path.2012.08.008

Tustison NJ, Yassa MA, Rizvi B, Cook PA, Holbrook AJ, Sathishkumar MT, Tustison MG, Gee JC, Stone JR, Avants BB

ANTsX neuroimaging-derived structural phenotypes of UK Biobank.
Sci Rep. 2024;14(1):8848 - PMID: 38632390 - PMCID: PMC11024129 - DOI: 10.1038/s41598-024-59440-6

Langenau DM, Keefe MD, Storer NY, Guyon JR, Kutok JL, Le X, Goessling W, Neuberg DS, Kunkel LM, Zon LI

Corrigendium: Effects of RAS on the genesis of embryonal rhabdomyosarcoma.
Genes Dev. 2024;38(5-6):289 - PMID: 38631822 - PMCID: PMC11065167 - DOI: 10.1101/gad.351747.124

Chivukula RR, Montoro DT, Leung HM, Yang J, Shamseldin HE, Taylor MS, Dougherty GW, Zariwala MA, Carson J, Daniels MLA, Sears PR, Black KE, Hariri LP, Almogarri I, Frenkel EM, Vinarsky V, Omran H, Knowles MR, Tearney GJ, Alkuraya FS, Sabatini DM

A human ciliopathy reveals essential functions for NEK10 in airway mucociliary clearance.
Nat Med. 2020;26(2):244-251 - PMID: 31959991 - PMCID: PMC7018620 - DOI: 10.1038/s41591-019-0730-x

Leijssen LGJ, Dinaux AM, Amri R, Taylor MS, Deshpande V, Bordeianou LG, Kunitake H, Berger DL

Impact of intramural and extramural vascular invasion on stage II-III colon cancer outcomes.
J Surg Oncol. 2019;119(6):749-757 - PMID: 30644557 - PMCID: PMC6629581 - DOI: 10.1002/jso.25367

Cai L, Michelakos T, Deshpande V, Arora KS, Yamada T, Ting DT, Taylor MS, Castillo CF, Warshaw AL, Lillemoe KD, Ferrone S, Ferrone CR

Role of Tumor-Associated Macrophages in the Clinical Course of Pancreatic Neuroendocrine Tumors (PanNETs).
Clin Cancer Res. 2019;25(8):2644-2655 - PMID: 30670493 - PMCID: PMC6582654 - DOI: 10.1158/1078-0432.CCR-18-1401

Taylor MS, Chougule A, MacLeay AR, Kurzawa P, Chebib I, Le L, Deshpande V

Morphologic Overlap Between Inflammatory Myofibroblastic Tumor and IgG4-related Disease: Lessons From Next-generation Sequencing.
Am J Surg Pathol. 2019;43(3):314-324 - PMID: 30451733 - PMCID: PMC6637760 - DOI: 10.1097/PAS.0000000000001167

Chougule A, Taylor MS, Nardi V, Chebib I, Cote GM, Choy E, Nielsen GP, Deshpande V

Spindle and Round Cell Sarcoma With EWSR1-PATZ1 Gene Fusion: A Sarcoma With Polyphenotypic Differentiation.
Am J Surg Pathol. 2019;43(2):220-228 - PMID: 30379650 - PMCID: PMC6590674 - DOI: 10.1097/PAS.0000000000001183

Honselmann KC, Pergolini I, Castillo CF, Deshpande V, Ting D, Taylor MS, Bolm L, Qadan M, Wellner U, Sandini M, Bausch D, Warshaw AL, Lillemoe KD, Keck T, Ferrone CR

Timing But Not Patterns of Recurrence Is Different Between Node-negative and Node-positive Resected Pancreatic Cancer.
Ann Surg. 2020;272(2):357-365 - PMID: 32675550 - PMCID: PMC6639153 - DOI: 10.1097/SLA.0000000000003123

Takahashi F, Chiba N, Tajima K, Hayashida T, Shimada T, Takahashi M, Moriyama H, Brachtel E, Edelman EJ, Ramaswamy S, Maheswaran S

Breast tumor progression induced by loss of BTG2 expression is inhibited by targeted therapy with the ErbB/HER inhibitor lapatinib.
Oncogene. 2011;30(27):3084-95 - PMID: 21339742 - DOI: 10.1038/onc.2011.24
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